cell ranger arc v2 software (10X Genomics)
86
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10X Genomics
cell ranger arc v2 software
Cell Ranger Arc V2 Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+arc+software/cellranger/pm42314674-348-18-16
Average 86 stars, based on 1 article reviews
Cell Ranger Arc V2 Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+arc+software/cellranger/pm42314674-348-18-16
Average 86 stars, based on 1 article reviews
cell ranger arc v2 software - by Bioz Stars,
2026-10
86/100 stars
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Software:Article Title: Cell type-specific multi-omics analysis of cocaine use disorder in the human caudate nucleus Article Snippet: Final libraries were prepared as indicated in the 10x Genomics protocol and sequenced at NGS Competence Center Tübingen (Tübingen, Germany) using an Illumina NovaSeq6000 sequencer with a depth of 50,000 read pairs per nuclei for the RNA libraries and 25,000 read pairs per nuclei for the ATAC libraries. .. Raw data obtained from single-nuclei RNA- and ATAC-sequencing was preprocessed using the Article Title: Comparative analysis of gene regulation in single cells using Compass. Article Snippet: .. Non-standard chromosomes were filtered using REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data CompassDB Open source http://compass-db.com/ Software and algorithms R (version 4.1.2) Open source https://www.r-project.org/ GEOquery (version 2.62.2) Open source https://www.bioconductor.org/packages/ release/bioc/html/GEOquery.html Article Title: Identification of endothelial and mesenchymal FOXF1 enhancers involved in alveolar capillary dysplasia Article Snippet: .. The raw sequencing reads from the ACDMPV dataset were mapped to the human reference genome hg38 (10x Genomics refdata-cellranger-arc-GRCh38-2020) using Article Title: Integrating spatial and single-cell multi-omics analysis of induced pluripotent stem cell-derived cervical adenocarcinoma model Article Snippet: .. Raw reads from the single-cell gene expression and single-cell ATAC libraries for each tissue were processed and aligned using Article Title: Single-cell roadmap of human gonadal development Article Snippet: For each sequenced scRNA-seq library, we performed read alignment to the 10X Genomics’ GRCh38 v.3.1.0 (human) or Mm10-2020 (mouse) reference genomes, quantification and initial quality control using the Cell Ranger Software (v.3.1, 10X Genomics) using default parameters. .. For each sequenced multimodal snRNA-seq library, we performed read alignment to the 10X Genomics’ GRCh38 v.3.1.0 (human) reference genome, quantification and initial quality control using the Article Title: Comparative analysis of gene regulation in single cells using Compass Article Snippet: .. Article Title: Conservation of transcriptional regulatory networks in zebrafish and human periderm facilitates identification of GRHL1 as an orofacial cleft risk gene Article Snippet: ATAC and gene expression libraries were prepared and sequenced on Illumina HiSeq 2500 sequencer. .. Raw sequence data was mapped on zebrafish danRer11 genome using 10X Genomics Sequencing:Article Title: Identification of endothelial and mesenchymal FOXF1 enhancers involved in alveolar capillary dysplasia Article Snippet: .. The raw sequencing reads from the ACDMPV dataset were mapped to the human reference genome hg38 (10x Genomics refdata-cellranger-arc-GRCh38-2020) using Article Title: Conservation of transcriptional regulatory networks in zebrafish and human periderm facilitates identification of GRHL1 as an orofacial cleft risk gene Article Snippet: ATAC and gene expression libraries were prepared and sequenced on Illumina HiSeq 2500 sequencer. .. Raw sequence data was mapped on zebrafish danRer11 genome using 10X Genomics Single Cell:Article Title: Integrating spatial and single-cell multi-omics analysis of induced pluripotent stem cell-derived cervical adenocarcinoma model Article Snippet: .. Raw reads from the single-cell gene expression and single-cell ATAC libraries for each tissue were processed and aligned using Gene Expression:Article Title: Integrating spatial and single-cell multi-omics analysis of induced pluripotent stem cell-derived cervical adenocarcinoma model Article Snippet: .. Raw reads from the single-cell gene expression and single-cell ATAC libraries for each tissue were processed and aligned using Control:Article Title: Single-cell roadmap of human gonadal development Article Snippet: For each sequenced scRNA-seq library, we performed read alignment to the 10X Genomics’ GRCh38 v.3.1.0 (human) or Mm10-2020 (mouse) reference genomes, quantification and initial quality control using the Cell Ranger Software (v.3.1, 10X Genomics) using default parameters. .. For each sequenced multimodal snRNA-seq library, we performed read alignment to the 10X Genomics’ GRCh38 v.3.1.0 (human) reference genome, quantification and initial quality control using the |